Microbial Isolate Pipeline is an end-to-end solution for linked read analysis of a single or a batch of microbial isolates. It incorporates standard methods for microbial genome assembly and evaluation, as well as tools for comparing genome statistics before and after applying TELL-Seq™ linked read barcodes.

Metagenomics Pipeline is an end-to-end solution for two major metagenomics analysis objectives: (1) initial taxonomic classification and relative abundance estimation; and (2) metagenomic genome binning, assembly, evaluation and characterization. 

The general data analysis pipeline includes the following three software packages:
TELL-Read takes as input the sequencing output from an NGS sequencing instrument and generates linked-read FASTQ data, as well as QC reports.

TELL-Sort takes as input the linked-read data from TELL-Read and performs variant calling and phasing.

TELL-Link takes as input the linked-read data from TELL-Read and performs de novo assembly to build barcode-aware assembly graph, assemble contigs, and perform scaffolding.