Publications
Targeted Phasing of 2-200 Kilobase DNA Fragments with a Short-Read Sequencer and a Single-Tube Linked-Read Library Method (2023) (UST)
VERONIKA MIKHAYLOVA, MADISON RZEPKA, TETSUYA KAWAMURA, YU XIA, PETER L. CHANG, SHIGUO ZHOU, LONG PHAM, NAISARG MODI, LIKUN YAO, ADRIAN PEREZ-AGUSTIN, SARA PAGANS, T. CHRISTIAN BOLES, MING LEI, YONG WANG, IVAN GARCIA-BASSETS, ZHOUTAO CHEN
View: BioRxiv (2023)
Ultralow-input single-tube linked-read library method enables short-read second-generation sequencing systems to routinely generate highly accurate...(2020) (UST)
Collapsible content
SpLitteR: Diploid genome assembly using TELL-Seq linked-reads and assembly graphs (2023)
SpLitteR: Diploid genome assembly using TELL-Seq linked-reads and assembly graphs (PDF)
IVAN TOLSTOGANOV, ZHOUTAO CHEN, PAVEL A. PEVZNER, ANTON KOROBEYNIKOV
View: BioRxiv (2023)
Candida albicans selection for human commensalism results in substantial within-host diversity without decreasing fitness for invasive disease (2023)
FAITH M. ANDERSON, NOELLE D. VISSER, KEVIN R. AMSES, ANDREA
HODGINS-DAVIS, ALEXANDRA M. WEBER, KATURA M. METZNER, MICHAEL J. MCFADDEN, RYAN
E. MILLS, MATTHEW J. O’MEARA, TIMOTHY Y. JAMES, TERESA R. O’MEARAI
View: PLoS Biol (2023)
Genome Sequence of Lichtheimia ornata, an Emerging Opportunistic Mucorales Pathogen (2023)
Genome Sequence of Lichtheimia ornata, an Emerging Opportunistic Mucorales Pathogen (PDF)
TERRANCE SHEA, JASON T. MOHABIR, TANIA
KURBESSOIAN, BRITTANY BERDY, JAMES FONTAINE, ANDREAS GNIRKE, JONATHAN LIVNY,
JASON E. STAJICH, CHRISTINA A. CUOMO AND VINCENT MICHAEL BRUNO
View: BioRxiv (2023)
Draft genome assemblies of the avian louse Brueelia nebulosa and its associates using long-read sequencing from an individual specimen (2023)
ANDREW D SWEET, DANIEL R BROWNE, ALVARO G HERNANDEZ, KEVIN P JOHNSON, STEPHEN L CAMERON AUTHOR NOTES
View: Oxford Academic (2023)
Characterizing the microbial metagenome of calcareous stromatolite formations in the San Felipe Creek in Anza Borrego Desert (2023)
ROSALINA STANCHEVA, ARUN SETHURAMAN, HOSSEIN KHADIVAR, JENNA
ARCHAMBEAU, ELLA CAUGHRAN, ASHLEY CHANG, BRAD HUNTER, CHRISTIAN IHENYEN, MARVIN
ONWUKWE, DARIANA PALACIOS, CHLOE LA PRAIRIE, NICOLE READ, JULIANNA TSANG,
BRIANNA VEGA, CRISTINA VELASQUEZ, XIAOYU ZHANG, ELINNE BECKET, BETSY READ
View: BioRxiv (2023)
Exploring high-quality microbial genomes by assembly of linked-reads with high barcode specificity using deep learning (2022)
ZHENMIAO ZHANG, HONGBO WANG, CHAO YANG, YUFEN HUANG, ZHEN
YUE, YANG CHEN, LIJUAN HAN, AIPING LYU, XIAODONG FANG, LU ZHANG
View: BioRxiv (2023)
Human commensal Candida albicans strains demonstrate substantial within-host diversity and retained pathogenic potential (2022)
FAITH M ANDERSON, NOELLE VISSER, KEVIN AMSES, ANDREA HODGINS-DAVIS, ALEXANDRA M WEBER, KATURA M METZNER, MICHAEL J MCFADDEN, RYAN E MILLS, MATTHEW J O’MEARA, TIMOTHY Y JAMES, TERESA R O’MEARA
View: BioRxiv (2023)
LRTK: A unified and versatile toolkit for analyzing linked-read sequencing data (2022)
LRTK: A unified and versatile toolkit for analyzing linked-read sequencing data (PDF)
CHAO YANG, ZHENMIAO ZHANG, HERUI LIAO, LU ZHANG
View: BioRxiv (2023)
Genome of a novel Sediminibacterium discovered in association with two species of freshwater cyanobacteria from streams in Southern California (2022)
Whole-genome risk prediction of common diseases in human preimplantation embryos (2022)
Linked‑read sequencing for detecting short tandem repeat expansions (2022)
Linked‑read sequencing for detecting short tandem repeat expansions (PDF)
READMAN CHIU, INDHU-SHREE RAJAN-BABU, INANC BIROL & JAN M. FRIEDMAN
Anoxygenic phototrophic Chloroflexota member uses a Type I reaction center (2020)
Anoxygenic phototrophic Chloroflexota member uses a Type I reaction center (PDF)
JM TSUJI, NA SHAW, S NAGASHIMA, JJ VENKITESWARAN, SL SCHIFF, S HANADA, M TANK, JD NEUFELD
View: BioRxiv (2020)
cloudSPAdes: assembly of synthetic long reads using de Bruijn graphs (2019)
cloudSPAdes: assembly of synthetic long reads using de Bruijn graphs (PDF)
IVAN TOLSTOGANOV, ANTON BANKEVICH, ZHOUTAO CHEN, PAVEL A PEVZNER
View: Bioinformatics, Volume 35, Issue 14, July 2019, Pages i61–i70
Public Data Set
Ultra-low input single tube linked read library method enables short read NGS systems to generate highly accurate and economical long-range sequencing information...
Ultra-low input single tube linked read library method enables short read NGS systems to generate highly accurate and economical long-range sequencing information for de novo assembly and haplotype phasing
